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Rfam: Wikipedia, clans and the "decimal" release
Abstract The Rfam database aims to catalogue non-coThe Rfam database aims to catalogue non-coding {RNAs} through the use of sequence alignments and statistical profile models known as covariance models. In this contribution, we discuss the pros and cons of using the online encyclopedia, Wikipedia, as a source of community-derived annotation. We discuss the addition of groupings of related {RNA} families into clans and new developments to the website. Rfam is available on the Web at http://rfam.sanger.ac.uk.le on the Web at http://rfam.sanger.ac.uk.
Added by wikilit team Added on initial load  +
Collected data time dimension Longitudinal  +
Conclusion For the forthcoming minor release of Rfam,For the forthcoming minor release of Rfam, we have added a number of new and notable families. Of particular note are the direct submissions of Stockholm formatted alignments and corresponding Wikipedia articles from the RNA community via the RNA families track at RNA Biology (8). This track has released much of the burden of building these new families from our curators, and the families produced have been built and annotated by experts and are therefore of high quality.experts and are therefore of high quality.
Data source Experiment responses  +
Doi 10.1093/nar/gkq1129 +
Google scholar url http://scholar.google.com/scholar?ie=UTF-8&q=%22Rfam%3A%2BWikipedia%2C%2Bclans%2Band%2Bthe%2B%22decimal%22%2Brelease%22  +
Has author Paul P. Gardner + , Jennifer Daub + , John Tate + , Benjamin L. Moore + , Isabelle H. Osuch + , Sam Griffiths-Jones + , Robert D. Finn + , Eric P. Nawrocki + , Diana L. Kolbe + , Sean R. Eddy + , Alex Bateman +
Has domain Health + , Information systems +
Has topic Ontology building +
Month November  +
Pages gkq1129  +
Peer reviewed Yes  +
Publication type Journal article  +
Published in Nucleic Acids Research +
Research design Experiment  +
Research questions The Rfam database aims to catalogue non-coThe Rfam database aims to catalogue non-coding RNAs through the use of sequence alignments and statistical profile models known as covariance models. In this contribution, we discuss the pros and cons of using the online encyclopedia, Wikipedia, as a source of community‐derived annotation. a source of community‐derived annotation.
Revid 10,931  +
Theories Undetermined
Theory type Analysis  +
Title Rfam: Wikipedia, clans and the "decimal" release
Unit of analysis Article  +
Url http://nar.oxfordjournals.org/cgi/content/abstract/gkq1129v1  +
Wikipedia coverage Main topic  +
Wikipedia data extraction Live Wikipedia  +
Wikipedia language Not specified  +
Wikipedia page type Other  +
Year 2010  +
Creation dateThis property is a special property in this wiki. 15 March 2012 20:30:05  +
Categories Ontology building  + , Health  + , Information systems  + , Publications with missing comments  + , Publications  +
Modification dateThis property is a special property in this wiki. 30 January 2014 20:31:14  +
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